Do wonders with these cool packages

Other useful packages and applications

  • AIDA implements the Adaptive Image Deconvolution Algorithm.
  • Alglib is a cross-platform numerical analysis and data processing library.
  • Assimulo is a package for solving ordinary differential equations. Binaries cannot be distributed due to GPL restrictions.
  • BALLView is a molecular modeling and visualization application.
  • Bento is a pythonic packaging solution for Python software.
  • Bigfloat, arbitrary precision correctly-rounded floating point arithmetic, via MPFR.
  • Biogeme performs estimation of discrete choice models.
  • BioImageXD is software for analysis and visualization of multidimensional biomedical images.
  • CasADi implements automatic differentiation in forward and adjoint modes.
  • CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy.
  • CGAL-bindings are bindings for the Computational Geometry Algorithms Library.
  • Coloc_utils computes colocalization coefficients from confocal images.
  • CVXOPT is a package for convex optimization. Binaries cannot be distributed due to GPL restrictions.
  • DeVIDE is a dataflow application builder for the rapid prototyping of medical visualization and image processing techniques.
  • Django is a high-level Web framework.
  • EMAN2 is a greyscale scientific image processing suite with a focus on transmission electron microscopy. Supports many image formats.
  • FARSIGHT is a toolkit for microscopy image analysis based using Bio-Formats.
  • Ffnet is a feed-forward neural network. Binaries cannot be distributed due to GPL restrictions.
  • Gexiv2 is a GObject-based wrapper around the exiv2 library for image metadata.
  • GHMM, the General Hidden Markov Model library.
  • Glumpy, fast OpenGL numpy visualization.
  • Graph-tool is an efficient module for manipulation and statistical analysis of graphs.
  • Iris is a library for analysing and visualising meteorological and oceanographic data sets.
  • ITK, the Insight Segmentation and Registration Toolkit, is a software system for image analysis.
  • Libtfr calculates multi-taper windowed and time-frequency reassignment spectrograms. Binaries cannot be distributed due to GPL restrictions.
  • M2Crypto is a complete wrapper for OpenSSL. Requires OpenSSL binaries.
  • Mantid is a framework that supports high-performance computing and visualization of scientific data.
  • MathGL is a library for scientific data visualization.
  • mMass is an mass spectrometry tool.
  • MMCorePy allows to control microscope hardware via Micro-Manager.
  • Msim, superresolution fluorescence microscopy of multicellular organisms.
  • Ncrypt is yet another OpenSSL wrapper.
  • Nodebox-GL is a library for generating 2D animations.
  • OpenGLContext is a testing and learning environment for PyOpenGL.
  • OpenKinect provides access to the Xbox Kinect device. Requires LibUSB 1.2.6.
  • OpenMDAO is a Multidisciplinary Design Analysis and Optimization (MDAO) framework.
  • OpenPIV is a package for Particle Image Velocimetry (PIV).
  • OpenSlide reads whole-slide images, high resolution images exceeding RAM sizes.
  • Panda3D is a framework for 3D rendering and game development.
  • ParticleStats performs analysis of intracellular particle motility and cytoskeletal polarity.
  • Peak_detection implements the Gaussian peak detection described in Segré et al.
  • Polymode performs modal analysis of microstructured optical fibers. Binaries cannot be distributed due to GPL restrictions.
  • PolyVox is a library for the storage and processing of volumetric environments.
  • Priithon is a platform for image analysis and algorithm development. Includes HIS, SDT, SIF, and SPE file readers.
  • PsychoPy, software for psychology and neuroscience.
  • Py-bcrypt is a wrapper of OpenBSD’s Blowfish password hashing code.
  • PyAudiere is a high-level audio interface using the Audiere sound library.
  • pyCGNS provides an interface to the CGNS/SIDS data model.
  • PyCorrFit is a versatile tool for FCS data analysis.
  • PyCrypto provides cryptographic modules.
  • PyDSTool is a dynamical systems modeling, simulation and analysis environment.
  • Pyffmpeg is a wrapper for FFmpeg, a solution to record, convert and stream audio and video.
  • PyGreSQL interfaces to a PostgreSQL database.
  • Pygrib is a module for reading GRIB meteorological files.
  • PyGSL provides an interface for the GNU Scientific Library (gsl).
  • PyGst, bindings for the GStreamer multimedia framework.
  • Pykit is a backend compiler for high-level typed code.
  • PyME, the Python Microscopy Environment, provides image acquisition and data analysis functionality for widefield microscopy applications.
  • Pyo is a digital signal processing module.
  • PyODE is a set of bindings for the Open Dynamics Engine.
  • pyOpenSSL is an interface to the OpenSSL library. Requires OpenSSL binaries.
  • Pysam is a module for reading and manipulating SAM nucleotide sequence alignment files.
  • Pysifreader reads Andor SIF multi-channel image files.
  • PySUNDIALS provides bindings for the SUNDIALS suite of solvers.
  • PySVN interfaces the Subversion version control system.
  • Python-Ogre is an interface to the Ogre 3D graphics library.
  • Pythonisosurfaces, a marching cubes iso-surface implementation.
  • PythonOCC is a 3D CAD/CAE/PLM development framework.
  • QuTiP simulates the dynamics of open quantum systems. Binaries cannot be distributed due to GPL restrictions.
  • RootPy provides an interface with the ROOT data analysis framework on top of PyROOT.
  • Sherpa is a modeling and fitting application.
  • SimpleCV is a framework for building computer vision applications.
  • SLOTH tracks stick-like objects with high resolution. Includes a Nikon ND2 reader.
  • Slycot is a wrapper for selected SLICOT routines. Binaries cannot be distributed due to GPL restrictions.
  • SpacePy tools for the space science community.
  • Stdic computes a deformation function between images (image registration).
  • STScI_python provides a general astronomical data analysis infrastructure.
  • VIPS is an image processing library with no image size limits.
  • Yt, astrophysical simulation analysis and visualization.

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